**** Whole Mouse Catalog - Genome ****

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** Selected Major Databases **

Mouse Genome Informatics (MGI=MGD+GXD)
Rat Genome Database
Portable Dictionary of the Mouse Genome - [companion web guide]
Mouse microsatellite/SSLP map project, at the Whitehead Institute/MIT Center for Genome Research
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** Genome Mapping **

MGD linkage maps
MGD marker mapping data search form
MGD DNA probe search form
MGD RI data sets search form
MGD interspecific mouse backcross DNA mapping panels
MGD Composite RI Data Sets search form
MGI Mouse Facts: Mouse sequencing project progress New!
MRC Chromosome Atlas Maps New!
MRC Mouse Chromosome Atlas Maps
MRC Mouse Chromosomal Region Homology Search
MRC Mouse Imprinting Resources (with maps and data)
MRC Standard Ideogram/Anomaly Breakpoints (with data and maps)
MRC Mouse X Chromosome Physical Map
European Collaborative Interspecific Mouse Backcross (EUCIB) Database
EUCIB physical chromosome maps
EUCIB combined marker chromosome maps
EUCIB chromosome panels
MIT Mouse microsatellite/SSLP linkage data (with Java map viewer)
MIT Rat microsatellite/SSLP linkage data (with chromosome maps)
Clickable mouse cytogenetic maps
Mouse Backcross DNA Panel Mapping Resource
NCBI Entrez PubMed Search and Display Tool
Rat gene listings, search by chromosome (RATMAP)
Genetic Maps of the Rat Genome
EMBL Radiation Hybrid Database
TJL Mouse Radiation Hybrid Database
TJL Backcross DNA Panel Mapping Resource
TLJ Rat Genome Data
Trans-NIH Mouse Initiative New!
Microsatellite Markers, Nuffield Department of Surgery New!
NIH Report: Priority Setting for Mouse Genomics and Genetics Resources New!
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** Genes **

MGD Genetic Markers and Mouse Locus Catalog search form
GXD Gene Expression Data
GXD cDNA Clone and EST Expression
GXD Literature Reference Search
Mouse Developmental Atlas and Gene Expression Database
GENBANK sequence search with BLAST at NCBI
MGD Mammalian Homology search form
Lane List of named mouse mutations and alleles of polymorphic loci
Dysmorphic Human-Mouse Homology Database (DHMHD)
Human/Mouse Homology Relationships, tables of homologous regions
TBASE -Transgenic and Targeted KO Mice, with database search
European Mouse Mutant Archive (EMMA) New!
Transgenic and Targeted Mutant Animal Database, at Oak Ridge National Lab (search page)
Rat gene list, by chromosome, from the RATMAP Server
RATMAP Rat gene list, search
Rat strain classification by alleles of biochemical loci
Gene-Family Databases
ENU-Mouse Mutagenesis Screen, German Human Genome Project
ENU Mutagenesis Programme, UK MRC Mouse Genome Centre at Harwell New!
Gene List Search, at the MRC Mammalian Genetics Unit
Resource of Gene Trap Insertions
Univ. of Iowa Rat EST Project
Fancy mouse coat color genetics
ORNL Mutant mouse database
TIGR Rat Gene Index
TIGR Mouse Gene Index
WashU-HHMI Mouse EST Project New!
NCBI Unigene - Mus musculus New!
NCBI UniGene - Rattus norvegicus New!
Riken Mouse Encyclopedia New!
Omnibank EST database New!
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** Cytogenetics **

Mouse Chromosomal Anomoly Database
Scanned image of mouse G-banded chromosomes (368 K image) (thumbnail version)
Mouse ideograms panel, also individual chromosomes in JPEG or Postscript formats, and info (from UWash Pathology)
Clickable mouse cytogenetic maps
Rodent karyotype collection at the UC Berkely Museum of Vertebrate Zoology
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** Nucleic Acid Resources **

MGD Probe and PCR Primer search form
MGD Marker Mapping Data search form
Mouse microsatellite/SSLP map project, at the Whitehead Institute/MIT Center for Genome Research
Rat microsatellite/SSLP linkage data
Genomic DNAs from The Jackson Laboratory Mouse DNA Resource
Ethanol-preserved tissues from the UC Berkely Museum of Vertebrate Zoology
DNA probes, from the Imperial Cancer Research Fund
cDNA and genomic libraries from CloneTech for Rat and Mouse
Research Genetics: Mouse BAC and YAC, and Rat YAC libraries
German Human Genome Project's Resource Centre (and search pages)
YAC Screening Centre, Leiden (dead link?)
BIOS Laboratories P1 Screening (dead link?)
Oncor, chromosome painting probes
Jackson Lab Mouse DNA Resource
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** Defined Strains **

MGD Composite RI Data Sets search form
MGI Rat and Mouse inbred strains listings
Rat inbred lines in the world (or in Japan)
Rat strain classification by alleles of biochemical loci
RT1 typing of selected inbred rat lines
MapManager format resources for backcross and recombinant inbreeding analysis
Coat color and appearance for commonly used mice with spontanteous mutations
International Index of Laboratory Animals
NAS Animal Models and Genetic Stocks Information Program: Mice and Rats New!
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** Engineered Mutants **

TBASE -transgenic and gene targeted mice
European Mouse Mutant Archive (EMMA) New!
Bioscience Knockout database
BioMedNet database of targeted mouse gene mutations
Transgenic Animal Science: Principles and Methods
Internet Resources for Transgenic and Targeted Mutation Research
Transgenic and Targeted Mutant Animal Database, at Oak Ridge National Lab (search page)
UCD Medpath Transgenic Mouse Searcher 2.0 (password access only)
Search form for "transgenic animal" or "gene targeting" grants currently funded by the NIH
Induced mutant strains available at the Jackson Laboratory, sorted by system affected
BigBlue and MutaMouse web site
Mammary Transgene Database
Transgenic Techniques in Mice: A Video Guide
The Microinjection Workshop, includes some protocols, links to transgenic facilities
Targeted Mutagenesis in Mice: A Video Guide
Manipulating the Mouse Embryo (book)
Some considerations and also protocols for ES Cell Work (from the Washington University Embryonic Stem Cell Core)
Tail DNA Extraction and DNA Purification for Injection, and some other protocols
Outlines of Gene Targeting Techniques and Transgenesis Techniques, from the University of Michigan
ES Cell and Transgenesis Protocols (U. Michigan)
Abstracts and Images from Papers and Posters on Transgenic Mice (almost all mammary gland)
Some Transgenic Mouse Protocols, from UC Irvine
Manufacturing Mice (Duke Univ. Magazine article) (dead link?)
International Mouse Strain Resources (and European mirror)
European Mouse Mutant Archive
Cre Transgenic Database
Pathology of Genetically-altered Mice
NAS ILAR: Standardized Nomenclature for Transgenic Mice
Transgenic Animals: Animal Welfare and Ethics
About Transgenic Animals
Transgenic animal construction outline
ES Cell-derived animal construction outline
Engineered animals, breeding

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** Nomenclature and Standards **

MGD Mouse Nomenclature Guidelines & Locus Symbol Registry
Helpful Hints for Understanding Strain Nomenclature
Rat genetics nomenclature
Guide to naming transgenic, gene targeted , and insertion mutant mice [or quick reference]
Names of cloned mouse genes mapped to alleles
International Rodent Numbering Commision
Laboratory registration code listing (also Japanese labs)
NAS ILAR: Laboratory code registry
NAS ILAR: International committee on standardized genetic nomenclature for mice
Harmonization of Nomenclature and Methods in Laboratory Animal Based Research
IMSR mouse genetics glossary New!
Laboratory animal science acronyms New!
Indiana University BioTech's Life Sciences Dictionary New!
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Genome | Cell | Organ | Organism | Laboratory | Bioscience | Other

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Page last updated 02Jun99 New!
© 1995-1999 Eric H. Mercer

Please send comments to: wmc@muridae.com